3D Molecule Viewer

Source code checked in, #80132

Project Collection Service Accounts — Mon, 01 Oct 2012 21:49:39 GMT

Upgrade: New Version of LabDefaultTemplate.xaml. To upgrade your build definitions, please visit the following link: http://go.microsoft.com/fwlink/?LinkId=254563

Source code checked in, #80131

Project Collection Service Accounts — Mon, 01 Oct 2012 21:43:10 GMT

Checked in by server upgrade

New Post: Problem with source code? Problem with my machine?

christoph_hausner — Tue, 10 May 2011 21:22:38 GMT

This seems to be related to the problem described here. With non-english date and time settings in Windows the PDB files are incorrectly parsed.

Source code checked in, #55373

_TFSSERVICE — Mon, 02 Aug 2010 22:49:34 GMT

Checked in by server upgrade

New Post: Computer problem

Pammachio — Sun, 31 Jan 2010 14:39:45 GMT

I all,
I have a problem on my Windows Vista that began afetr the purchase of an external Hard Disk Freecom.
A few days afetr the purchase I disconnected it while it was writing and, since that moment, every time I connect and disconnect it, the PC go to freeze mode for 5 minutes.
The same thing happen even if the hard disk is disconnected: every time I start windows it go to freeze a little after the password, and every time I connect and disconnect a usb device.
I have looked for the solution everywhere, updated windows, unistalled and installed the hard disk from the device manager but I solved the problem only when I restored a recent backup.
Yesterday the Hard disk was writing a backup while Vista was installing the updates; at the end of the proceure windows restarted automatically and the problem began again!!!
The Pc go to freeze when it starts, every time I connect or disconnect the hard disk, an usb earphone that has always worked switch on but there is no audio and I don't know how many others usb devices will have problems.
Has anyone an idea to solve this problem before I throw out of the window Vista or the the hard disk?
Thank you

__________________
Never seen gift ideas like these! (geschenkideen on german or regalos originales on espanol), album foto matrimonio

New Post: Problem with source code? Problem with my machine?

njss — Mon, 08 Dec 2008 19:36:54 GMT

No Edgar...No idea so far...!

Is there anyone with strong will to help us!?!!

It's an awsome app....no doubt!

New Post: Problem with source code? Problem with my machine?

edgarsanchez — Tue, 25 Nov 2008 18:07:04 GMT

Hi Nelson,

I've got your same problem, did you find a way to solve it?

Updated Release: InterKnowlogy 3D Molecule Viewer (Mar 24, 2008)

kobush — Tue, 25 Nov 2008 12:21:07 GMT

Version 3.0 Codeplex Release

3D Molecule Viewer is a stand-alone, demo version of the C-ME application that InterKnowlogy built for the Scripps Research Institute (TSRI). It is a WPF application built in C#. Affectionately called "The Cancer App", this stand-alone, source code version of the application does not have the SharePoint dependency and allows you to open sample 3D Protein Database Format (PDB) files directly....spin them in 3D, zoom in on them, display them from different views, etc. This means you can get the application running quickly and stare at the code. Just a heads up: although WPF makes 3D dramatically easier, it still is not for the faint of heart. There is a lot of Trigonometry and Calculus in the code. And it's really well written - which means its object oriented and consequently abstracted.

Released: InterKnowlogy 3D Molecule Viewer (Mar 24, 2008)

Tue, 25 Nov 2008 12:21:05 GMT

New Post: Problem with source code? Problem with my machine?

njss — Thu, 20 Nov 2008 14:02:20 GMT

I've downloaded this ap source code to see what is being done here...but...suprise....suprise...I can open the sample files, but all i see is a bunch of points floating in the space...where are the 3D rendering of the molecules?
It's a problem with my graphic card or what?

I have a NVIDIA Quadro FX2500 and a DELL m90 and Windows Vista...also VS2008 SP1 and .net 3.5 SP1 as well as DirectX SDK 8 November 2008

I really would like to learn how to do awsome 3D renderings in WPF...

Regards,

Nelson Silva

CREATED ISSUE: Double.Parse error on non-English locales

BartoszBien — Mon, 07 Apr 2008 18:30:57 GMT

The viewer crashes during PDB load on locales where decimal separator is not a dot (e.g. Polish locale uses a comma). To overcome the problem, add a second argument to all four Double.Parse calls in Atom.cs:

double x = Double.Parse(pdbLine.Substring(30, 8), System.Globalization.CultureInfo.InvariantCulture);
(etc.)

Best regards,
BB

RELEASED: InterKnowlogy 3D Molecule Viewer (Mar 24, 2008)

Tue, 25 Mar 2008 04:57:06 GMT

*Version 3.0 Codeplex Release*

3D Molecule Viewer is a stand-alone, demo version of the C-ME application that InterKnowlogy built for the Scripps Research Institute (TSRI). It is a WPF application built in C#. Affectionately called "The Cancer App", this stand-alone, source code version of the application does not have the SharePoint dependency and allows you to open sample 3D Protein Database Format (PDB) files directly....spin them in 3D, zoom in on them, display them from different views, etc. This means you can get the application running quickly and stare at the code. Just a heads up: although WPF makes 3D dramatically easier, it still is not for the faint of heart. There is a lot of Trigonometry and Calculus in the code. And it's really well written - which means its object oriented and consequently abstracted.

UPDATED RELEASE: InterKnowlogy 3D Molecule Viewer (Mar 24, 2008)

Tue, 25 Mar 2008 04:57:06 GMT

UPDATED RELEASE: InterKnowlogy 3D Molecule Viewer (Mar 24, 2008)

Tue, 25 Mar 2008 04:53:25 GMT

*Version 3.0 Codeplex Release*

UPDATED WIKI: Home

timhuckaby — Tue, 25 Mar 2008 02:01:57 GMT

What is 3D Molecule Viewer?

3D Molecule Viewer is a stand-alone, demo version of the C-ME application that InterKnowlogy built for the Scripps Research Institute (TSRI). It is a WPF application built in C#. Affectionately called "The Cancer App", the full version of this application (a WPF front-end for SharePoint) is running in production and installed all over the world. As the brain-child of Dr. Peter Kuhn of TSRI, C-ME is just a step in realizing his dream/mission of "getting his arms around" cancer to turn it into a managed disease.

This stand-alone, source code version of the application does not have the SharePoint dependency and allows you to open sample 3D Protein Database Format (PDB) files directly....spin them in 3D, zoom in on them, display them from different views, etc. This means you can get the application running quickly and stare at the code. Just a heads up: although WPF makes 3D dramatically easier, it still is not for the faint of heart. There is a lot of Trigonometry and Calculus in the code. And it's really well written - which means its object oriented and consequently abstracted.

The problem that C-ME solved (what Dr. Peter Kuhn did not have) was a way to view cancer and SARS molecules in 3D (and 2D) and attach research directly to the 3D (and 2D) surface of the molecules. Research takes many forms: Office documents, like Word, PDFs, URLs to content all over the world, pictures, and even SharePoint discussions. Upon "pinning" research to the exact spot on the 3D (or 2D) surface of the molecule the research is actually persisted into SharePoint with the 5 coordinates of 3D. This Rich Client WPF application consumes SharePoint Web Services to pull that off. This "new" application development paradigm solves an interesting problems like a highly graphical and usable 3D client for the desktop and the broad reach of a browser based application (SharePoint) to house the research and handle the collaboration and workflow.

Quick Links

CREATED RELEASE: InterKnowlogy 3D Molecule Viewer (Mar 24, 2008)

Tue, 25 Mar 2008 00:33:58 GMT

test content

UPDATED WIKI: Home

timhuckaby — Sat, 22 Mar 2008 15:49:04 GMT

What is 3D Molecule Viewer?

Quick Links

Install 3D Molecule Viewer

Check out the Silverlight app with Technical Case Study and Video on Microsoft.com!

Read About C-ME on the InterKnowlogy Site.

Watch "The Cancer Video" (63mbs) - highlighted in the Worldwide Launch of Windows Vista.

Check out the Channel 9 Interview with Tim Huckaby of InterKnowlogy & Dr. Peter Kuhn of the Scripps Research Institute.

Read the Business Case Study on Microsoft.com.

Read the White Paper on the PLoS One Site.

3D Molecule Viewer and C-ME were developed for The Scripps Research Institute by InterKnowlogy. For more information on the project and to see other samples of their work, you can visit their website.

**Delete the following note before publishing **

This project is currently in setup mode and only available to project coordinators and developers. Once you have finished setting up your project you can publish it to make it available to all CodePlex visitors.

There are three requirements before you publish:

- Edit this page to provide information about your project
- Upload the initial source code for your project
- Add your project license

Additional information on starting a new project is available here: Project Startup Guide.

UPDATED WIKI: Home

timhuckaby — Sat, 22 Mar 2008 15:22:51 GMT

What is 3D Molecule Viewer?

3D Molecule Viewer is a stand-alone, demo version of the C-ME application that InterKnowlogy built for the Scripps Research Institute (TSRI). Affectionately called "The Cancer App", the full version of this application (a WPF front-end for SharePoint) is running in production and installed all over the world. As the brain-child of Dr. Peter Kuhn of TSRI, C-ME is just a step in realizing his dream/mission of "getting his arms around" cancer to turn it into a managed disease.

This stand-alone, source code version of the application does not have the SharePoint dependency and allows you to open sample 3D Protein Database Format (PDB) files directly....spin them in 3D, zoom in on them, display them from different views, etc. This means you can get the application running quickly and stare at the code. Just a heads up: although WPF makes 3D dramatically easier, it still is not for the faint of heart. There is a lot of Trigonometry and Calculus in the code. And it's really well written - which means its object oriented and consequently abstracted.

The problem that C-ME solves (what Dr. Peter Kuhn did not have) is a way to view cancer and SARS molecules in 3D (and 2D) and attach research directly to the 3D (and 2D) surface of the molecules. Research takes many forms: Office documents, like Word, PDFs, URLs to content all over the world, pictures, and even SharePoint discussions. Upon "pinning" research to the exact spot on the 3D (or 2D) surface of the molecule the research is actually persisted into SharePoint with the 5 coordinates of 3D. The Rich Client WPF application is simply calling SharePoint Web Services to pull that off. This "new" application development paradigm solves an interesting problem: Not everyone in cancer research runs Windows. In fact, the majority do not. So, those folks, although they don't get to see the 3D graphical view of the cancer and SARS molecules, they still can get to the research in the broad reach SharePoint client.

Quick Links

Install 3D Molecule Viewer

Check out the Silverlight app with Technical Case Study and Video on Microsoft.com!

Read About C-ME on the InterKnowlogy Site.

Watch "The Cancer Video" (63mbs) - highlighted in the Worldwide Launch of Windows Vista.

Read the Business Case Study on Microsoft.com.

Read the White Paper on the PLoS One Site.

3D Molecule Viewer and C-ME were developed for The Scripps Research Institute by InterKnowlogy. For more information on the project and to see other samples of their work, you can visit their website.

**Delete the following note before publishing **

This project is currently in setup mode and only available to project coordinators and developers. Once you have finished setting up your project you can publish it to make it available to all CodePlex visitors.

There are three requirements before you publish:

- Edit this page to provide information about your project
- Upload the initial source code for your project
- Add your project license

Additional information on starting a new project is available here: Project Startup Guide.

UPDATED WIKI: Home

timhuckaby — Sat, 22 Mar 2008 15:16:36 GMT

What is 3D Molecule Viewer?

Quick Links

Install 3D Molecule Viewer

Silverlight app with Technical Case Study and Video on Microsoft.com

About C-ME

Watch "The Cancer Video" - highlighted in the Worldwide Launch of Windows Vista (63mbs)

Read the Business Case Study on Microsoft.com

Read the White Paper on the PLoS One Site

3D Molecule Viewer and C-ME were developed for The Scripps Research Institute by InterKnowlogy. For more information on the project and to see other samples of their work, you can visit their website.

**Delete the following note before publishing **

This project is currently in setup mode and only available to project coordinators and developers. Once you have finished setting up your project you can publish it to make it available to all CodePlex visitors.

There are three requirements before you publish:

- Edit this page to provide information about your project
- Upload the initial source code for your project
- Add your project license

Additional information on starting a new project is available here: Project Startup Guide.

UPDATED WIKI: Home

timhuckaby — Sat, 22 Mar 2008 15:06:30 GMT

What is 3D Molecule Viewer?

Quick Links

Install 3D Molecule Viewer

About C-ME

Watch "The Cancer Video" - highlighted in the Worldwide Launch of Windows Vista (63mbs)

Read the Case Study on Microsoft.com

Read the White Paper on the PLoS One Site

3D Molecule Viewer and C-ME were developed for The Scripps Research Institute by InterKnowlogy. For more information on the project and to see other samples of their work, you can visit their website.

**Delete the following note before publishing **

This project is currently in setup mode and only available to project coordinators and developers. Once you have finished setting up your project you can publish it to make it available to all CodePlex visitors.

There are three requirements before you publish:

- Edit this page to provide information about your project
- Upload the initial source code for your project
- Add your project license

Additional information on starting a new project is available here: Project Startup Guide.